open-science-resources
github.com/asoplata/open-science-resources ↗A publicly-editable collection of open science resources, including tools, datasets, meta-resources, etc.
Use this list with your AI agent
Add the Context Awesome MCP server to Claude, Cursor, or any MCP client, then ask:
"Show me open data repositories and services resources from open-science-resources"
Installation instructions →What's inside
Open Data Repositories and Services
- 3D Brain Atlas Reconstructor
- 3DModelDB - "A collection of 3D printable versions of published neuron morphologies, both traced and artificial."
"A collection of 3D printable versions of published neuron morphologies, both traced and artificial."
- ABIDE - Autism Brain Imaging Data Exchange
Autism Brain Imaging Data Exchange
- academictorrents
- Allen Brain Atlas Data Portal
- BEI Resource Repository - Catalog of pathogens, disease agents, etc.
Catalog of pathogens, disease agents, etc.
Open Code
- A Quick Guide to Software Licensing for the Scientist-Programmer
- Awesome Pipeline - List of pipeline, HPC, and scientific software
List of pipeline, HPC, and scientific software
- bioboxes - Bioinformatics software containers
Bioinformatics software containers
- Bioconductor - R software suite for analyzing high-throughput genomic data
R software suite for analyzing high-throughput genomic data
- Bonsai - Experimental pipeline control, includes video analysis and control of experimental setups
Experimental pipeline control, includes video analysis and control of experimental setups
- Choose a License.com
Publishing
- arXiv - Famous preprint server for physics, computer science, etc.
Famous preprint server for physics, computer science, etc.
- Authorea
- biorXiv - Preprint server for biology
Preprint server for biology
- Cofactor - Open access journal selector
Open access journal selector
- Creative Commons - Choose a License
Choose a License
- Curvenote
Open DIY Hardware
- Autopatcher - DIY hardware for builting a cell autopatching system for electrophysiology
DIY hardware for builting a cell autopatching system for electrophysiology
- FinchSchope - 3D printed miniature microscope
3D printed miniature microscope
- Open Ephys - Open-source electrophysiology
Open-source electrophysiology
- Open Hardware Repository - run by CERN
run by CERN
- Open Optogenetics Hardware
Organizations Conferences Communities
- BD2K - Big Data to Knowledge at NIH
Big Data to Knowledge at NIH
- Biostars - Bioinformatics Q & A
Bioinformatics Q & A
- BSSW - Better Scientific SoftWare project
Better Scientific SoftWare project
- Codata - Committee on Data of the International Council for Science
Committee on Data of the International Council for Science
- Code for Science and Society
- Code is Science
Project Management
- Clowder - Open source data management for research
Open source data management for research
- Liquid
- OSF - Open Science Framework
Open Science Framework
Meta-resources
- Connected Researchers - Digital tools for researchers
Digital tools for researchers
- Entrez Direct - Command-line tools for interacting with these databases
Command-line tools for interacting with these databases
- Glossary of Open Research Terms
- GRID - Global Research Identifier Database
Global Research Identifier Database
- https://www.force11.org/group/resource-identification-initiative
- NIF - Neuroscience Infomation Framework - Search for EVERY kind of neuroscience data, atlas, software, everything!
Neuroscience Infomation Framework - Search for EVERY kind of neuroscience data, atlas, software, everything!
Showing a sample of 259 resources. View the full list on GitHub →