awesome-neuroscience
github.com/awesomelistsio/awesome-neuroscience ↗A curated list of tools, frameworks, datasets, educational resources, and community links for neuroscience.
Use this list with your AI agent
Add the Context Awesome MCP server to Claude, Cursor, or any MCP client, then ask:
"Show me educational resources resources from awesome-neuroscience"
Installation instructions →What's inside
Educational Resources
- 3Blue1Brown Neural Networks
A video series on understanding neural networks.
- Coursera: Computational Neuroscience
A beginner-friendly course on computational neuroscience.
- EdX: Fundamentals of Neuroscience
A comprehensive course from Harvard University.
- Principles of Neural Science
A foundational book in neuroscience.
Brain Imaging Tools
- AFNI
A software suite for analyzing and visualizing functional MRI data.
- FreeSurfer
A software suite for analyzing and visualizing structural brain imaging data.
- FSL
A library for analyzing MRI, fMRI, and DTI data.
- SPM
A MATLAB toolbox for analyzing brain imaging data.
Neuroscience Datasets
- Allen Brain Atlas
A comprehensive resource for gene expression and brain connectivity data.
- Human Connectome Project
Datasets for understanding brain connectivity.
- NeuroMorpho.Org
A database of digitally reconstructed neuron morphologies.
- OpenNeuro
A platform for sharing and analyzing brain imaging datasets.
Brain-Computer Interfaces (BCIs)
Visualization Tools
Community and Forums
- BrainHack
A community for open neuroscience and collaborative research.
- NeuroStars
A community platform for neuroscience-related questions and discussions.
- r/Neuroscience
A subreddit for discussing neuroscience topics.
- Stack Overflow: Neuroscience
Q&A for neuroscience-related programming questions.
Brain Simulation and Modeling
- Brian
A Python library for developing and simulating spiking neural networks.
- NEST Simulator
A tool for simulating large networks of spiking neurons.
- NEURON
A simulation environment for modeling neurons and networks.
- The Virtual Brain (TVB)
A platform for simulating large-scale brain networks.
Neuroscience and AI
- DeepLabCut
A tool for tracking animal behavior using deep learning.
- Elephant
A library for analyzing electrophysiology data using Python.
- NetPyNE
A Python library for developing neural network simulations with AI integration.
- Nipype
A Python-based platform for neuroimaging workflows.
Showing a sample of 39 resources. View the full list on GitHub →