awesome-health-datasets

Whole-genome sequencing for population genetics and variant analysis.

Large-scale variant database with 140,000+ exomes & genomes.

Genomic, epigenomic, transcriptomic, and proteomic data across 33 cancer types.

In-depth genetic and health information from ~500,000 volunteer participants.

Longitudinal multisite study for early detection of Alzheimer's.

~224,000 chest X-rays for weak supervision and uncertainty-aware classification.

Chest X-ray images for COVID-19 and pneumonia detection.

~10,000 dermoscopy images for melanoma detection and skin lesion classification.

High-resolution neuroimaging datasets to map human brain connections.

Lung CT scans focusing on pulmonary nodules.

Diverse EHR & genomics dataset focusing on underrepresented populations.

Multi-center critical care dataset of clinical data from over 200,000 ICU stays.

Nationwide inpatient & emergency data for healthcare utilization and cost analysis.

Extended clinical notes from MIMIC-III critical care database. v1.0.0 (2026).

PPG (photoplethysmography) benchmark dataset for cardiorespiratory analysis from MIMIC-III. v1.0.0 (2026).

Comprehensive critical care dataset containing de-identified health records of ICU patients (2008–2019).

167k synthetic clinical notes with discharge summaries and comprehensive medical histories (HuggingFace, 2026).

Biomedical question answering and semantic indexing dataset.

Scientific literature corpus with 1M+ COVID-19 research papers.

100k real doctor-patient interactions across medical specialties, including diagnoses and treatment recommendations (HuggingFace, 2026).

6,444 healthcare Q&A pairs designed for fine-tuning medical chatbot language models (HuggingFace, 2026).

Comprehensive drug information: 700 medications with therapeutic uses, side effects, and descriptions for medical chatbots and clinical decision support (HuggingFace, 2026).

Pediatric voice recordings for speech analysis and voice disorder detection (v1.0.0, 2026).

Daily symptom tracking from 34 endometriosis patients over 1-10 months, including symptom frequency, intensity, and MedDRA coding (2026).

sEMG (surface electromyography) dataset with 63 subjects and dynamic transitions for hand gesture recognition and biometric authentication (2026).

Standard test material for evaluation of arrhythmia detectors.

Polysomnography & sleep signals for sleep disorder detection.

Renowned repository of physiological signals and open medical data.

Diverse clinical cases from chronic diseases (MS, diabetes complications) to acute conditions (heart disease, respiratory failure) from academic publications (HuggingFace, 2026).

Official health information system of the Brazilian Ministry of Health.

Open data portal for the Brazilian Unified Health System (SUS).

Comprehensive catalog of surveys, censuses, vital statistics, and other health-related data.

WHO's gateway to health-related statistics for its 194 Member States.

Tabular clinical data for diabetes risk prediction.