awesome-computational-biology
github.com/inoue0426/awesome-computational-biology ↗Awesome list of computational biology.
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GitHub Stars
371
Curated Resources
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7 hours ago
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DatabasesBenchmarks & DatasetsAPIPreprocessing ToolsMachine Learning Tasks and Models
Use this list with your AI agent
Add the Context Awesome MCP server to Claude, Cursor, or any MCP client, then ask:
"Show me genomics, cancer & biomedical cohorts resources from awesome-computational-biology"
Installation instructions →What's inside
Benchmarks & Datasets
- 1000 Genomes ProjectGenomics, Cancer & Biomedical Cohorts
- Adamson et al. 2016 Perturb-seqGenetic Perturbation & Perturb-seq
- BACEMolecular, Protein & Drug Discovery
- BEAT AMLDrug Response & Perturbation
- BentoMolecular, Protein & Drug Discovery
- BindingDB Curated SetsMolecular, Protein & Drug Discovery
Databases
- 10x Genomics DatasetGenome
- AlphaFold Protein Structure DatabaseProtein
- BindingDBInteraction
- BioCycPathway
- BioGRIDInteraction
- Cancer Cell Line EncyclopediaInteraction
Machine Learning Tasks and Models
- AESTETIKFoundation Models
- Agent LaboratoryAgentic AI for Biology
- AI4Chem/ChemLLM-7B-ChatLLM for Biology
- AlphaFold3Foundation Models
- AlphaGenomeFoundation Models
- AnkhFoundation Models
Preprocessing Tools
Showing a sample of 371 resources. View the full list on GitHub →