awesome_neuropixels
github.com/julie-fabre/awesome_neuropixels ↗A curated list of awesome Neuropixels resources.
138
GitHub Stars
69
Curated Resources
15
Categories
22 hours ago
Last Refreshed
CommunityNeuropixels papers and manualsCourses, talks and videosProbe setup, care and sharpeningChronic implantsData acquisitionGeneral frameworks that incorporate many of the steps belowData preprocessingSpike-sortingQuality controlClassifying cell typesTracking cells over daysLoading and plotting dataTrajectory planningHistology
Use this list with your AI agent
Add the Context Awesome MCP server to Claude, Cursor, or any MCP client, then ask:
"Show me trajectory planning resources from awesome_neuropixels"
Installation instructions →What's inside
Trajectory planning
- Allen Brain Atlases - includes adult mouse, developing mouse, mouse spinal cord, adult human, and developing human
includes adult mouse, developing mouse, mouse spinal cord, adult human, and developing human
- here
- Mouse (adult) Allen + Franklin&Paxinos unified Atlas - Chon et al.
Chon et al.
- Mouse (adult) Franklin & Paxinos, ed. 2
- Neuropixels Trajectory Explorer
- Pinpoint
General frameworks that incorporate many of the steps below
Histology
Tracking cells over days
Classifying cell types
Data preprocessing
Probe setup, care and sharpening
Community
- Discord server
now archived and replaced with
Showing a sample of 69 resources. View the full list on GitHub →