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awesome-single-cell-foundation

github.com/katarinayuan/awesome-single-cell-foundation ↗

Paper collection for single cell foundation models

40
GitHub Stars
42
Curated Resources
10
Categories
23 hours ago
Last Refreshed
Single cell RNA sequencing (scRNA-seq)Spatially-resolved Transcriptomic (SRT)Paired scATAC-seq and scRNA-seqMulti-modality (Incorporating Text)Modeled as text4D Nucleome (Hi-C, Micro-C, ChIA-PET) + Enhancer activity (STARR-seq) + Transcriptome (CAGE-seq, RNA-seq) + Epigenome (ChIP-seq)Biomedical Test OnlyProtein Sequence OnlyDNA Sequence OnlyRNA Sequence only

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What's inside

Single cell RNA sequencing (scRNA-seq)

Spatially-resolved Transcriptomic (SRT)

Paired scATAC-seq and scRNA-seq

Multi-modality (Incorporating Text)

Modeled as text

4D Nucleome (Hi-C, Micro-C, ChIA-PET) + Enhancer activity (STARR-seq) + Transcriptome (CAGE-seq, RNA-seq) + Epigenome (ChIP-seq)

Biomedical Test Only

Protein Sequence Only

Showing a sample of 42 resources. View the full list on GitHub →