awesome-cryoem
github.com/kuixu/awesome-cryoem ↗A collaborative list of awesome CryoEM (Cryo Electron Microscopy) resources.
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Installation instructions →What's inside
Methods and Softwares
- 2.1
Tutorial (v2.1) (The quickest way to learning RELION)
- CCP4
Collaborative Computational Project No. 4 Software for Macromolecular X-Ray Crystallography.
- COOT
A interactive visualization model building, model completion and validation.
- EMAN2
A scientific image processing software suite with a focus on CryoEM and CryoET.
- EMfold
Meiler Lab, placement of helices is restricted to CryoEM density regions.
- [paper]
Guides
- 3 Mins Introduction of CryoEMOfficial Guides
3 Mins Introduction of CryoEM for beginners.
- CryoEM 101Official Guides
- CryoEM CourseOfficial Guides
- EMAN2 Video TutorialsThird party Guides
- MRC lab CryoEMOfficial Guides
- Single-particle cryo-electron microscopyOfficial Guides
Nature Method Review.
Computational Problems
- A fast method for particle picking in cryo-electron micrographs based on fast R-CNNParticle Picking
- AutoCryoPickerParticle Picking
AutoCryoPicker: An Unsupervised Learning Approach for Fully Automated Single Particle Picking in Cryo-EM Images
- AutoPickerParticle Picking
Semi-automated selection of cryo-EM particles in RELION-1.3.
- [Book chapter]Model Building
- [code]3D Reconstruction
- [code]3D Reconstruction
Structure Validation
- B-factor
A measure of (local) mobility in the (macro)molecule.
- FSC
Fourier shell correlation.
- GDT-HA
The percentage of correctly aligned residues in the 5 Å LGA sequence-independent superposition of the model and experimental structure of the target.
- [paper]Tomography
- [paper]
- [paper]Other Related Research/Tools
computing the local resolution of 3D density maps, 2013.
Workshop Docs
- EMAN2
- Resource from Meiler Lab
Rosetta Tutorials, Teaching Resources, etc.
DataBases
- EMDB
The Electron Microscopy Data Bank (EMDB)
- EMPIAR
EMPIAR, the Electron Microscopy Pilot Image Archive, is a public resource for raw, 2D electron microscopy images.
- EMPIAR: a public archive for raw electron microscopy image data
- PDB
Protein Data Bank
- PDBe
Protein Data Bank in Europe
- PDBj
Protein Data Bank Japan
Showing a sample of 109 resources. View the full list on GitHub →