awesome-multi-omics
github.com/mikelove/awesome-multi-omics ↗List of software packages for multi-omics analysis
Use this list with your AI agent
Add the Context Awesome MCP server to Claude, Cursor, or any MCP client, then ask:
"Show me ecology multi-table literature resources from awesome-multi-omics"
Installation instructions →What's inside
Multi-omics application papers
- A community effort to assess and improve drug sensitivity prediction algorithms
Costello (NCI/DREAM) -
- A multivariate analysis approach to the integration of proteomic and gene expression data
Fagan -
- Comprehensive integration of single cell data
Stuart -
- Identifying subpathway signatures for individualized anticancer drug response by integrating multi-omics data
Xu -
- Inferring gene–gene interactions and functional modules using sparse canonical correlation analysis
Wang -
- Integrating single-cell transcriptomic data across different conditions, technologies, and species.
Butler -
Software packages and methods
- ade4Ecology multi-table literature
Dray - Implementing the Duality Diagram for Ecologists -
- AJIVEMulti-omics correlation or factor analysis
Feng - angle-based JIVE -
- BASSMulti-omics correlation or factor analysis
Zhao - Bayesian group factor analysis -
- BCCMulti-omics clustering / classification / prediction
Lock - Bayesian consensus clustering -
- BIDIFACMulti-omics correlation or factor analysis
Park - bidimensional integrative factorization -
- cardelinoSingle cell multi-omics
- gene expression states to clones (SNVs from scRNA-seq + bulk exome data) -
Multi-omics reviews / evaluations
- A practical data processing workflow for multi-OMICS projects
Kohl -
- A review on machine learning principles for multi-view biological data integration
Li -
- A Selective Review of Multi-Level Omics Data Integration Using Variable Selection
Wu -
- A technical review of multi-omics data integration methods: from classical statistical to deep generative approaches
Baião -
- Benchmarking joint multi-omics dimensionality reduction approaches for cancer study
Cantini -
- Clustering and variable selection evaluation of 13 unsupervised methods for multi-omics data integration
Pierre-Jean -
Meetings and workshops
- Mathematical Frameworks for Integrative Analysis of Emerging Biological Data Types
June 14-19, 2020 in Banff, Canada
Multi-omics data management
- MultiAssayExperiment
Ramos - Software for the integration of multi-omics experiments in Bioconductor -
- muon
Bredikhin -
- Omilayers
Kioroglou - Python package for efficient data management to support multi-omic analysis -
Batch effect correction
- MultiBaC
Ugidos -
Multi-omics visualization
- rakaia
Watson -
Showing a sample of 159 resources. View the full list on GitHub →