awesome-linked-reads
github.com/pontushojer/awesome-linked-reads ↗Collection of tools and resources for linked-reads
Use this list with your AI agent
Add the Context Awesome MCP server to Claude, Cursor, or any MCP client, then ask:
"Show me tools resources from awesome-linked-reads"
Installation instructions →What's inside
Tools
- Aldy
Allelic decomposition and exact genotyping of highly polymorphic and structurally variant genes
- Ambigram
Detection of complex breakage-fusion-bridge genome rearrangements that supports linked-reads
- Aquila
Diploid personal genome assembly and comprehensive variant detection based on linked-reads
- AquilaDeepFilter
Deep learing based filtering of genome-wide false positive large deletions
- Aquila_stLFR
Human haplotype-resolved assembly and variant detection for stLFR, hybrid assembly for linked-reads
- AquilaSV
Structural variant detection from region-based phased diploid assemblies for 10X and stLFR linked-reads
Showing a sample of 69 resources. View the full list on GitHub →