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A curated list of amazingly awesome R libraries, resources and package collection.

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Data manipulationVisualizationImport DataNetwork graphInteractive GraphicsWord cloudText miningMachine learningTime seriesMarkdownDevelopment in ROnline blogsLearning materialsCheatsheetShinyBioinformaticsSingle-cell

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What's inside

Learning materials

Cheatsheet

Visualization

  • alluvial

    Alluvial Diagrams.

  • arulesViz

    Visualizing Association Rules and Frequent Itemsets.

  • corrplot

    Visualization of a Correlation Matrix.

  • cowplot

    Streamlined Plot Theme and Plot Annotations for 'ggplot2'.

  • ggalluvial

    Alluvial Diagrams in 'ggplot2'.

  • GGally

    Extension to 'ggplot2'.

Development in R

  • Anaconda

    The World's Most Popular Python/R Data Science Platform.

  • bindrcpp

    An 'Rcpp' Interface to Active Bindings.

  • devtools

    Tools to Make Developing R Packages Easier.

  • goodpractice

    Advice on R Package Building.

  • Rcpp

    Seamless R and C++ Integration.

  • roxygen2

    In-Line Documentation for R.

Machine learning

  • arules

    Mining Association Rules and Frequent Itemsets.

  • boot

    Bootstrap Functions (Originally by Angelo Canty for S).

  • car

    Companion to Applied Regression.

  • caret

    Classification and Regression Training.

  • e1071

    Misc Functions of the Department of Statistics, ProbabilityTheory Group (Formerly: E1071), TU Wien.

  • gbm

    gradient boosted regression models.

Shiny

Bioinformatics

  • BLCAsubtyping

    Transcriptomic tools to classify bladder tumours according to six published molecular classifications.

  • CancerSubtypes

    Cancer subtypes identification, validation and visualization based on multiple genomic data sets.

  • classifyNMIBC

    This package implements a Pearson nearest-centroid classifier that assigns class labels to single samples according to the four transcriptomic UROMOL2021 classes of non-muscle-invasive bladder cancer (NMIBC): class 1, class 2a, class 2b and class 3.

  • clusterProfiler

    clusterProfiler: an R package for comparing biological themes among gene clusters.

  • CMScaller

    an R package for consensus molecular subtyping of colorectal cancer pre-clinical models.

  • CMSclassifier

    An R package and an example data set are provided to run the CMSclassifier.

Data manipulation

  • broom

    Convert Statistical Analysis Objects into Tidy Data Frames.

  • dbplyr

    A 'dplyr' Back End for Databases.

  • dplyr

    a grammar of data manipulation.

  • forcats

    Tools for Working with Categorical Variables (Factors).

  • hashmap

    The Faster Hash Map.

  • jsonlite

    A Robust, High Performance JSON Parser and Generator for R.

Showing a sample of 255 resources. View the full list on GitHub →