awesome-uk-biobank

Map DEXA images from UK Biobank dataset to abdominal aortic calcification scores

Identifying healthy individuals with Alzheimer neuroimaging phenotypes in the UK Biobank

Pretrained neural networks for brain age prediction in UK Biobank from MRI images

Predict participant sex from brain MRI images

Artificial intelligence derived fractal structure of the heart

Radiomics signatures of cardiovascular risk factors from cardiac MRI

Command line tool for easily extracting light and temperature data from Axivity AX3 accelerometers used in the UK Biobank

A tool to extract meaningful health information from large accelerometer datasets

Process the accelerometer CWA files from the UK Biobank activity monitoring study in Python

Predict coronary atherosclerotic heart disease from electrocardiogram

Contains code to preprocess UK Biobank data and train the NeuralCVD score (neural network-based integration of polygenic and clinical information of a prediction model for 10 year risk of major adverse cardiac events)

Functions to map between ICD-10 terms and PheCodes for UK Biobank hospital electronic health records

Simulation software for generating phenotypes from UK Biobank data

A tool to automate variable selection for research on large datasets. The provided example is on the variable dictionary of the UK Biobank Dataset

BiobankRead aims to provide Python-based tools for the extraction, cleaning and pre-processing of UK Biobank data

Docker versions of the utilities provided by UK Biobank

Tofu is a Python library for generating synthetic UK Biobank data

UK Biobank utilities for identifying fields and relevant metadata using Python

BGEN extraction tool (UK Biobank)

Contains scripts used to call CNVs using UK Biobank data

Detect large DNA duplications/deletions in UK Biobank Affymetrix Axiom array data

An R Function for calculating genetic risk scores in the UK Biobank cohort using DNA Nexus

An app for automatically functionally annotating the variants using FAVORannotator in UK Biobank RAP

Code & scripts implementing genetic association and fine-mapping analyses of UK Biobank data

Python scripts to extract and pre-process UK Biobank data

Download UK Biobank bulk data

Helper tools to process UK Biobank data

Functions to analyse UK Biobank genetic data directly from DNA Nexus' RStudio Workbench

Contains a collection of functions that facilitate the extraction of phenotypes from UK Biobank data

Prepare electronic medical record data from the UK Biobank for time-to-event analyses

Create a PheWAS code based phenome using ICD9 and ICD10 data from baskets of the UK Biobank

PHEnome Scan ANalysis Tool (pheWAS, Mendelian randomisation (MR)-pheWAS etc) in UK Biobank