awesome-synapse

Prototype Collaboration Portal

React component based configurations that generate community portals built on top of Synapse

The R version of

Shiny application to annotate and ingest metadata (manifest) files

This package is intended to assist Sage Bionetworks data curators to check the status of metadata and documentation files uploaded via the dccvalidator shiny application

package and Shiny app to perform data validation and QA/QC

Knit Rmarkdown files to Synapse wikis

A modular R package for extracting features from mobile sensor data

Synapse challenge utility functions + more

lightweight implementation of the Synapse Activity services, based on the PROV spec

Lambda function code to index files in S3 buckets by creating filehandles on Synapse, triggered by file changes to S3.

Python package for Biomedical Data model and Data Ingress Management

Client for using

Crawl through Synapse files to validate and process them given a plugin file format registry.

CWL interface to Synapse command line.

Nextflow interface to Synapse command line.

Workflows for processing rare disease data on Synapse.

This repository gathers existing tools used for data coordination at Sage.

This application computes statistics on the evaluation queues in Synapse.

This is the integration of NRGR and Synapse, linking data access approval in NRGR to data access in Synapse.

An application to geolocate all Synapse users and display them on a map.

Links one or more Synapse Evaluation queues to a workflow engine. Each Evaluation queue is associated with a workflow template. Each submission is a workflow job, an instance of the workflow template. Upon submission to the Evaluation queue the Workflow Orchestrator initiates and tracks the workflow job, sending progress notifications and uploading log files.

Sage Bionetworks hosts crowdsourcing challenges that examine questions in biology and medicine.

List of dockstore tools and workflows.