awesome-vdj
github.com/slowkow/awesome-vdj ↗📚 Tools and databases for analyzing HLA and VDJ genes.
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📚 Literature🗄️ VDJ Databases🔬 VDJ Analysis🗃️ HLA Databases🧬 HLA Analysis
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Installation instructions →What's inside
🔬 VDJ Analysis
- Absolut: Unconstrained lattice antibody-antigen bindings generator - One tool to simulate them all!Structure & Modeling
One tool to simulate them all!
- abstarRepertoire Analysis
- airrflowSingle-Cell
- ALICE: Antigen-specific Lymphocyte Identification by Clustering of Expanded sequencesClustering & Similarity
- AsEP-datasetEpitope Prediction
- BepiPred-3.0Sequence Processing
🗄️ VDJ Databases
- Adaptive Immune Receptor Repertoire (AIRR) CommunityStandards & Resources
- A Public Database of Memory and Naive B-Cell Receptor SequencesSequence Repositories
- Coronavirus-Binding Antibody Sequences & StructuresStructure Databases
- Human Vaccines Project (Human Immunome Program)Standards & Resources
- immuneACCESSSequence Repositories
- iReceptorSequence Repositories
🗃️ HLA Databases
🧬 HLA Analysis
- arcasHLA: Fast and accurate in silico inference of HLA genotypes from RNA-seqHLA Typing
- BIGDAWG: Case-Control Analysis of Multi-Allelic LociAssociation Studies
- bigmhcPeptide Prediction
- cdr3-QTLAssociation Studies
- EpVix: epitope reactivity analysis and epitope virtual crossmatchingPeptide Prediction
- HATK: HLA Analysis ToolkitAssociation Studies
📚 Literature
- High-Throughput and Single-Cell T Cell Receptor Sequencing Technologies
- HLA and kidney disease: from associations to mechanisms
- Mechanisms of central tolerance for B cells
- Mining adaptive immune receptor repertoires for biological and clinical information using machine learning
- SweHLA: the high confidence HLA typing bio-resource drawn from 1000 Swedish genomes
- Understanding the drivers of MHC restriction of T cell receptors
Resources
Showing a sample of 126 resources. View the full list on GitHub →