awesome-phages

Bacteriophage.news is a virtual space that provides general news, research articles & patient stories on phage therapy.

Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.

Lab from the University of Leicester focused on bacteriophages with plenty of resources for phage bioinformatics.

PhageAI is an AI-driven software platform using advanced Machine Learning and Natural Language Processing techniques for deeper understanding of the bacteriophages genomics.

Phage Directory curates a database of phage labs, phages, and host strains to advance research and phage therapy.

a comprehensive AI-based Framework for Phage Research & Therapy

An integrated tool for rapid prophage detection and annotation.

A new tool for identifying prophages in bacteria scanning hundreds to thousands of genomes and accurately extract complete (likely active) prophages from them.

A tool for identifying inducible prophage elements through read mapping.

MultiPhATE is a command-line program that runs gene finding and the PhATE annotation code over user-specified phage genomes, then performs gene-by-gene comparisons among the genomes.

Rapid discovery of novel prophages using biological feature engineering and machine learning.

Comparative genomics and genome exploration tool for bacteriophages. [

Rapid identification and annotation of prophage sequences within bacterial genomes and plasmids.

Prophage Hunter is a web server tool that employs several criteria to score how likely a prophage is beeing active within a bacterial genome. See also the paper

RAST (Rapid Annotation using Subsystem Technology) is a fully-automated service for annotating complete or nearly complete bacterial and archaeal genomes. It provides high quality genome annotations for these genomes across the whole phylogenetic tree.